=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for py310-macs2-2.2.8 (cd /usr/pkgsrc/biology/py-macs2/work/MACS-2.2.8/ && /usr/bin/env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\ PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS= PTHREADBASE=/usr DL_CFLAGS=\ -pthread\ DL_LDFLAGS=\ -pthread DL_LIBS= NPY_BLAS_LIBS=-lblas NPY_LAPACK_LIBS=-llapack\ -lblas NPY_CBLAS_LIBS=-lcblas\ -lblas PYTHON=/usr/pkg/bin/python3.10 CC=gcc CFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include/python3.10\ -I/usr/pkg/include CPPFLAGS=-I/usr/pkg/include/netlib\ -I/usr/include\ -I/usr/pkg/include/python3.10\ -I/usr/pkg/include CXX=c++ CXXFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include/python3.10\ -I/usr/pkg/include COMPILER_RPATH_FLAG=-Wl,-R F77=gfortran FC=gfortran FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-Wl,-zrelro\ -L/usr/lib\ -Wl,-R/usr/lib\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib LINKER_RPATH_FLAG=-R PATH=/usr/pkgsrc/biology/py-macs2/work/.cwrapper/bin:/usr/pkgsrc/biology/py-macs2/work/.buildlink/bin:/usr/pkgsrc/biology/py-macs2/work/.gcc/bin:/usr/pkgsrc/biology/py-macs2/work/.tools/bin:/usr/pkg/bin:/sbin:/usr/sbin:/bin:/usr/bin:/usr/pkg/sbin:/usr/pkg/bin:/usr/X11R7/bin:/usr/X11R6/bin:/usr/local/sbin:/usr/local/bin:/usr/pbulk/bin:/usr/pkg/bin:/usr/X11R7/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/usr/pkgsrc/biology/py-macs2/work/.home CWRAPPERS_CONFIG_DIR=/usr/pkgsrc/biology/py-macs2/work/.cwrapper/config CPP=cpp LOCALBASE=/usr/pkg X11BASE=/usr/X11R7 PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ users\ -m\ 755 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ pbulk\ -g\ users\ -m\ 755 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ pbulk\ -g\ users\ -m\ 755 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ users\ -m\ 644 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ pbulk\ -g\ users\ -m\ 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ users\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ users\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ users\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ users\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ users\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ users\ -m\ 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ users\ -m\ 664 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ users\ -m\ 775 INSTALL_INFO= MAKEINFO=/usr/pkgsrc/biology/py-macs2/work/.tools/bin/makeinfo FLEX= BISON= ITSTOOL=/usr/pkgsrc/biology/py-macs2/work/.tools/bin/itstool GDBUS_CODEGEN=/usr/pkgsrc/biology/py-macs2/work/.tools/bin/gdbus-codegen PKG_CONFIG=/usr/pkgsrc/biology/py-macs2/work/.tools/bin/pkg-config PKG_CONFIG_LIBDIR=/usr/pkgsrc/biology/py-macs2/work/.buildlink/lib/pkgconfig:/usr/pkgsrc/biology/py-macs2/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/usr/pkgsrc/biology/py-macs2/work/.pkg-config.log PKG_CONFIG_PATH= CWRAPPERS_CONFIG_DIR=/usr/pkgsrc/biology/py-macs2/work/.cwrapper/config /usr/pkg/bin/python3.10 setup.py build ) Traceback (most recent call last): File "/usr/pkg/lib/python3.10/site-packages/numpy/core/__init__.py", line 23, in from . import multiarray File "/usr/pkg/lib/python3.10/site-packages/numpy/core/multiarray.py", line 10, in from . import overrides File "/usr/pkg/lib/python3.10/site-packages/numpy/core/overrides.py", line 8, in from numpy.core._multiarray_umath import ( ImportError: /usr/pkg/lib/python3.10/site-packages/numpy/core/_multiarray_umath.so: Undefined PLT symbol "rintl" (symnum = 157) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/pkgsrc/biology/py-macs2/work/MACS-2.2.8/setup.py", line 88, in main() File "/usr/pkgsrc/biology/py-macs2/work/MACS-2.2.8/setup.py", line 28, in main from numpy import get_include as numpy_get_include File "/usr/pkg/lib/python3.10/site-packages/numpy/__init__.py", line 139, in from . import core File "/usr/pkg/lib/python3.10/site-packages/numpy/core/__init__.py", line 49, in raise ImportError(msg) ImportError: IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! Importing the numpy C-extensions failed. This error can happen for many reasons, often due to issues with your setup or how NumPy was installed. We have compiled some common reasons and troubleshooting tips at: https://numpy.org/devdocs/user/troubleshooting-importerror.html Please note and check the following: * The Python version is: Python3.10 from "/usr/pkg/bin/python3.10" * The NumPy version is: "1.25.2" and make sure that they are the versions you expect. Please carefully study the documentation linked above for further help. Original error was: /usr/pkg/lib/python3.10/site-packages/numpy/core/_multiarray_umath.so: Undefined PLT symbol "rintl" (symnum = 157) *** Error code 1 Stop. make[1]: stopped in /usr/pkgsrc/biology/py-macs2 *** Error code 1 Stop. make: stopped in /usr/pkgsrc/biology/py-macs2