=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Installing for R-tzdb-0.3.0
=> Generating pre-install file lists
=> Creating installation directories
* installing *source* package 'tzdb' ...
file 'inst/tzdata/zoneinfo2tdf.pl' has the wrong MD5 checksum
** using staged installation
** libs
c++ -std=gnu++11 -I"/usr/pkg/lib/R/include" -DNDEBUG  -I'/usr/pkg/lib/R/library/cpp11/include' -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -I../inst/include  -DINSTALL=dummy  -DAUTO_DOWNLOAD=0  -DHAS_REMOTE_API=0  -DUSE_OS_TZDB=0  -DONLY_C_LOCALE=1 -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c api.cpp -o api.o
c++ -std=gnu++11 -I"/usr/pkg/lib/R/include" -DNDEBUG  -I'/usr/pkg/lib/R/library/cpp11/include' -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -I../inst/include  -DINSTALL=dummy  -DAUTO_DOWNLOAD=0  -DHAS_REMOTE_API=0  -DUSE_OS_TZDB=0  -DONLY_C_LOCALE=1 -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c cpp11.cpp -o cpp11.o
c++ -std=gnu++11 -I"/usr/pkg/lib/R/include" -DNDEBUG  -I'/usr/pkg/lib/R/library/cpp11/include' -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -I../inst/include  -DINSTALL=dummy  -DAUTO_DOWNLOAD=0  -DHAS_REMOTE_API=0  -DUSE_OS_TZDB=0  -DONLY_C_LOCALE=1 -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c names.cpp -o names.o
c++ -std=gnu++11 -I"/usr/pkg/lib/R/include" -DNDEBUG  -I'/usr/pkg/lib/R/library/cpp11/include' -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -I../inst/include  -DINSTALL=dummy  -DAUTO_DOWNLOAD=0  -DHAS_REMOTE_API=0  -DUSE_OS_TZDB=0  -DONLY_C_LOCALE=1 -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c path.cpp -o path.o
c++ -std=gnu++11 -I"/usr/pkg/lib/R/include" -DNDEBUG  -I'/usr/pkg/lib/R/library/cpp11/include' -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -I../inst/include  -DINSTALL=dummy  -DAUTO_DOWNLOAD=0  -DHAS_REMOTE_API=0  -DUSE_OS_TZDB=0  -DONLY_C_LOCALE=1 -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c tz.cpp -o tz.o
c++ -std=gnu++11 -I"/usr/pkg/lib/R/include" -DNDEBUG  -I'/usr/pkg/lib/R/library/cpp11/include' -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -I../inst/include  -DINSTALL=dummy  -DAUTO_DOWNLOAD=0  -DHAS_REMOTE_API=0  -DUSE_OS_TZDB=0  -DONLY_C_LOCALE=1 -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c version.cpp -o version.o
c++ -std=gnu++11 -shared -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -Wl,-zrelro -L/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -pthread -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -latomic -o tzdb.so api.o cpp11.o names.o path.o tz.o version.o -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -lR
ld: cannot find -latomic
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/time/R-tzdb/work/tzdb/src
ERROR: compilation failed for package 'tzdb'
* removing '/usr/pkgsrc/time/R-tzdb/work/.destdir/usr/pkg/lib/R/library/tzdb'
*** Error code 1

Stop.
make[1]: stopped in /usr/pkgsrc/time/R-tzdb
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/time/R-tzdb