=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Installing for R-spatstat.utils-2.2.0
=> Generating pre-install file lists
=> Creating installation directories
* installing *source* package 'spatstat.utils' ...
** package 'spatstat.utils' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c circxseg.c -o circxseg.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c distseg.c -o distseg.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c fastinterv.c -o fastinterv.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c init.c -o init.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c inxyp.c -o inxyp.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c matchindices.c -o matchindices.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c matchpoints.c -o matchpoints.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c ply.c -o ply.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c primefax.c -o primefax.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c revcum.c -o revcum.o
gcc -shared -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -Wl,-zrelro -L/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -pthread -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -latomic -o spatstat.utils.so circxseg.o distseg.o fastinterv.o init.o inxyp.o matchindices.o matchpoints.o ply.o primefax.o revcum.o -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -lR
ld: cannot find -latomic
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/geography/R-spatstat.utils/work/spatstat.utils/src
ERROR: compilation failed for package 'spatstat.utils'
* removing '/usr/pkgsrc/geography/R-spatstat.utils/work/.destdir/usr/pkg/lib/R/library/spatstat.utils'
*** Error code 1

Stop.
make[1]: stopped in /usr/pkgsrc/geography/R-spatstat.utils
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/geography/R-spatstat.utils