=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for R/nloptr_1.2.2.2.tar.gz => Checksum SHA512 OK for R/nloptr_1.2.2.2.tar.gz ===> Installing dependencies for R-nloptr-1.2.2.2 ========================================================================== The following variables will affect the build process of this package, R-nloptr-1.2.2.2. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp Based on these variables, the following variables have been set: * BLAS_INCLUDES (not defined) * BLAS_LIBS = -lblas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACK_LIBS = -llapack -lblas You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency pkgconf-[0-9]*: found pkgconf-1.8.0 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency R>=4.2.0nb1: found R-4.2.0nb3 => Full dependency nlopt>=2.6.2: found nlopt-2.6.2 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for R-nloptr-1.2.2.2 ===> Extracting for R-nloptr-1.2.2.2 ===> Patching for R-nloptr-1.2.2.2 => Applying pkgsrc patches for R-nloptr-1.2.2.2 => Verifying /usr/pkgsrc/math/R-nloptr/patches/patch-configure => Applying pkgsrc patch /usr/pkgsrc/math/R-nloptr/patches/patch-configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-configure,v 1.3 2021/09/20 01:16:44 mef Exp $ | |=> Checking for portability problems in extracted files |ERROR: [check-portability.awk] => Found test ... == ...: |ERROR: [check-portability.awk] configure:2974: if test x"${nlopt_libs}" == x""; then |ERROR: [check-portability.awk] configure:2975: if test x"${PKGCONFIG}" == x"yes"; then |ERROR: [check-portability.awk] configure:3272: if test x"${PKGCONFIG}" == x"yes"; then | |--- configure.orig 2020-07-03 02:30:38.000000000 +0900 |+++ configure 2021-09-18 13:38:30.459037943 +0900 -------------------------- Patching file configure using Plan A... Hunk #1 succeeded at 2971. Hunk #2 succeeded at 3269. done ===> Creating toolchain wrappers for R-nloptr-1.2.2.2 ===> Configuring for R-nloptr-1.2.2.2 => Generating pkg-config files for builtin xz package. => Checking for portability problems in extracted files