=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Installing for R-microbenchmark-1.4.9
=> Generating pre-install file lists
=> Creating installation directories
* installing *source* package 'microbenchmark' ...
** package 'microbenchmark' successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... /usr/pkgsrc/benchmarks/R-microbenchmark/work/.tools/bin/grep
checking for egrep... /usr/pkgsrc/benchmarks/R-microbenchmark/work/.tools/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdint.h... (cached) yes
checking for stdlib.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for uint64_t... yes
checking for error_at_line... no
checking for mach_absolute_time... no
checking for library containing clock_gettime... none required
checking for best clockid_t to use with clock_gettime... CLOCK_MONOTONIC
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -D_POSIX_C_SOURCE=200112L -DHAVE_CONFIG_H  -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c do_nothing.c -o do_nothing.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -D_POSIX_C_SOURCE=200112L -DHAVE_CONFIG_H  -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c init.c -o init.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -D_POSIX_C_SOURCE=200112L -DHAVE_CONFIG_H  -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fPIC  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c nanotimer.c -o nanotimer.o
gcc -shared -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -Wl,-zrelro -L/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -pthread -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -latomic -o microbenchmark.so do_nothing.o init.o nanotimer.o -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -lR
ld: cannot find -latomic
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/benchmarks/R-microbenchmark/work/microbenchmark/src
ERROR: compilation failed for package 'microbenchmark'
* removing '/usr/pkgsrc/benchmarks/R-microbenchmark/work/.destdir/usr/pkg/lib/R/library/microbenchmark'
*** Error code 1

Stop.
make[1]: stopped in /usr/pkgsrc/benchmarks/R-microbenchmark
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/benchmarks/R-microbenchmark