=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Installing for R-Rcpp-1.0.9
=> Generating pre-install file lists
=> Creating installation directories
* installing *source* package 'Rcpp' ...
files 'inst/discovery/cxx0x.R', 'inst/examples/ConvolveBenchmarks/buildAndRun.sh', 'inst/examples/ConvolveBenchmarks/exampleRCode.r', 'inst/examples/ConvolveBenchmarks/overhead.r', 'inst/examples/ConvolveBenchmarks/overhead.sh', 'inst/examples/FastLM/benchmark.r', 'inst/examples/FastLM/benchmarkLongley.r', 'inst/examples/FastLM/fastLMviaArmadillo.r', 'inst/examples/FastLM/fastLMviaGSL.r', 'inst/examples/Misc/fibonacci.r', 'inst/examples/Misc/ifelseLooped.r', 'inst/examples/Misc/newFib.r', 'inst/examples/Misc/piBySimulation.r', 'inst/examples/OpenMP/OpenMPandInline.r', 'inst/examples/RcppInline/RObject.r', 'inst/examples/RcppInline/RcppInlineExample.r', 'inst/examples/RcppInline/RcppInlineWithLibsExamples.r', 'inst/examples/RcppInline/RcppSimpleExample.r', 'inst/examples/RcppInline/UncaughtExceptions.r', 'inst/examples/RcppInline/external_pointer.r', 'inst/examples/SugarPerformance/sugarBenchmarks.R', 'inst/examples/functionCallback/newApiExample.r' have the wrong MD5 checksums
** using staged installation
** libs
c++ -std=gnu++14 -I"/usr/pkg/lib/R/include" -DNDEBUG -I../inst/include/  -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c api.cpp -o api.o
c++ -std=gnu++14 -I"/usr/pkg/lib/R/include" -DNDEBUG -I../inst/include/  -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c attributes.cpp -o attributes.o
c++ -std=gnu++14 -I"/usr/pkg/lib/R/include" -DNDEBUG -I../inst/include/  -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c barrier.cpp -o barrier.o
c++ -std=gnu++14 -I"/usr/pkg/lib/R/include" -DNDEBUG -I../inst/include/  -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c date.cpp -o date.o
c++ -std=gnu++14 -I"/usr/pkg/lib/R/include" -DNDEBUG -I../inst/include/  -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c module.cpp -o module.o
c++ -std=gnu++14 -I"/usr/pkg/lib/R/include" -DNDEBUG -I../inst/include/  -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -fpic  -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c rcpp_init.cpp -o rcpp_init.o
c++ -std=gnu++14 -shared -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -Wl,-zrelro -L/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -pthread -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -latomic -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -lR
ld: cannot find -latomic
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/devel/R-Rcpp/work/Rcpp/src
ERROR: compilation failed for package 'Rcpp'
* removing '/usr/pkgsrc/devel/R-Rcpp/work/.destdir/usr/pkg/lib/R/library/Rcpp'
*** Error code 1

Stop.
make[1]: stopped in /usr/pkgsrc/devel/R-Rcpp
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/devel/R-Rcpp