=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Installing for R-RPostgreSQL-0.7.4 => Generating pre-install file lists => Creating installation directories * installing *source* package 'RPostgreSQL' ... file 'inst/devTests/copyTest.sh' has the wrong MD5 checksum ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking build system type... powerpc-unknown-netbsd9.0 checking host system type... powerpc-unknown-netbsd9.0 checking target system type... powerpc-unknown-netbsd9.0 checking for pg_config... /usr/pkgsrc/math/R-RPostgreSQL/work/.buildlink/bin/pg_config PG_CONFIG_BINDIR = /usr/pkg/bin PG_CONFIG_DOCDIR = /usr/pkg/share/doc/postgresql PG_CONFIG_HTMLDIR = /usr/pkg/share/doc/postgresql PG_CONFIG_INCLUDEDIR = /usr/pkg/include PG_CONFIG_PKGINCLUDEDIR = /usr/pkg/include/postgresql PG_CONFIG_INCLUDEDIR-SERVER = /usr/pkg/include/postgresql/server PG_CONFIG_LIBDIR = /usr/pkg/lib PG_CONFIG_PKGLIBDIR = /usr/pkg/lib/postgresql PG_CONFIG_LOCALEDIR = /usr/pkg/share/locale PG_CONFIG_MANDIR = /usr/pkg/man PG_CONFIG_SHAREDIR = /usr/pkg/share/postgresql PG_CONFIG_SYSCONFDIR = /usr/pkg/etc/postgresql PG_CONFIG_PGXS = /usr/pkg/lib/postgresql/pgxs/src/makefiles/pgxs.mk PG_CONFIG_CONFIGURE = PG_CONFIG_CC = gcc PG_CONFIG_CPPFLAGS = -I/usr/include -I/usr/pkg/include -I/usr/include/readline -I/usr/include/krb5 -I/usr/pkg/include/libxml2 -I/usr/pkg/include PG_CONFIG_CFLAGS = cflwarnall cflwarnmissing-prototypes cflwarnpointer-arith cflwarndeclaration-after-statement cflwarnerror=vla cflwarnendif-labels cflwarnmissing-format-attribute cflwarnimplicit-fallthrough=3 cflwarnformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard cflwarnno-format-truncation -O2 -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/include/readline -I/usr/include/krb5 PG_CONFIG_CFLAGS_SL = -fPIC -DPIC PG_CONFIG_LDFLAGS = cflwarnl,-zrelro -L/usr/lib cflwarnl,-R/usr/lib -L/usr/pkg/lib cflwarnl,-R/usr/pkg/lib cflwarnl,-z,now cflwarnl,-z,relro -L/usr/pkg/lib -L/usr/pkg/lib cflwarnl,--as-needed cflwarnl,-R'/usr/pkg/lib' PG_CONFIG_LDFLAGS_EX = PG_CONFIG_LDFLAGS_SL = PG_CONFIG_LIBS = -lpgcommon -lpgport -llz4 -lxml2 -lssl -lcrypto -lgssapi -lkrb5 -lcrypto -lz -ledit -lcurses -lpthread -lexecinfo -lrt -lm -lintl PG_CONFIG_VERSION = PostgreSQL 14.6 configure: checking for PostgreSQL header files /usr/pkg/lib /usr/pkg/include gcc -O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include -L/usr/pkg/lib conftest.c -lpq -o pqconftest ./pqconftest 140006...runs fine checking for "/usr/pkg/include/libpq-fe.h"... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c RS-DBI.c -o RS-DBI.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c RS-PQescape.c -o RS-PQescape.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c RS-PostgreSQL.c -o RS-PostgreSQL.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c RS-pgsql-copy.c -o RS-pgsql-copy.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c RS-pgsql-getResult.c -o RS-pgsql-getResult.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c RS-pgsql-pqexec.c -o RS-pgsql-pqexec.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c RS-pgsql-pqexecparams.c -o RS-pgsql-pqexecparams.o gcc -shared -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -Wl,-zrelro -L/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -pthread -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -latomic -o RPostgreSQL.so RS-DBI.o RS-PQescape.o RS-PostgreSQL.o RS-pgsql-copy.o RS-pgsql-getResult.o RS-pgsql-pqexec.o RS-pgsql-pqexecparams.o -L/usr/pkg/lib -lpq -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -lR ld: cannot find -latomic *** Error code 1 Stop. make: stopped in /usr/pkgsrc/math/R-RPostgreSQL/work/RPostgreSQL/src ERROR: compilation failed for package 'RPostgreSQL' * removing '/usr/pkgsrc/math/R-RPostgreSQL/work/.destdir/usr/pkg/lib/R/library/RPostgreSQL' *** Error code 1 Stop. make[1]: stopped in /usr/pkgsrc/math/R-RPostgreSQL *** Error code 1 Stop. make: stopped in /usr/pkgsrc/math/R-RPostgreSQL