=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Installing for R-Cairo-1.5.12.2 => Generating pre-install file lists => Creating installation directories * installing *source* package 'Cairo' ... file 'configure' has the wrong MD5 checksum ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/pkgsrc/graphics/R-Cairo/work/.tools/bin/grep checking for egrep... /usr/pkgsrc/graphics/R-Cairo/work/.tools/bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for pkg-config... /usr/pkgsrc/graphics/R-Cairo/work/.tools/bin/pkg-config checking whether pkg-config knows about cairo... yes checking for configurable backends... cairo cairo-ft cairo-pdf cairo-png cairo-ps cairo-xlib cairo-xlib-xrender checking whether --static is needed... no configure: CAIRO_CFLAGS=-I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT checking if R was compiled with the RConn patch... no checking cairo.h usability... yes checking cairo.h presence... yes checking for cairo.h... yes checking for PNG support in Cairo... yes checking for ATS font support in Cairo... no configure: CAIRO_LIBS=-L/usr/pkg/lib -L/usr/X11R7/lib -lfreetype -lbz2 -lpng16 -lz -Wl,-R/usr/pkg/lib -lcairo -lXext -lXrender -Wl,-rpath,/usr/X11R7/lib -lX11 checking for library containing deflate... none required checking whether Cairo programs can be compiled... yes checking whether cairo_image_surface_get_format is declared... no checking for FreeType support in cairo... yes checking whether FreeType needs additional flags... no checking wheter libjpeg works... no checking wheter libtiff works... no configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/cconfig.h ** libs gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c cairobem.c -o cairobem.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c cairogd.c -o cairogd.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c cairotalk.c -o cairotalk.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c img-backend.c -o img-backend.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c img-jpeg.c -o img-jpeg.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c img-tiff.c -o img-tiff.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c pdf-backend.c -o pdf-backend.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c ps-backend.c -o ps-backend.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c svg-backend.c -o svg-backend.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c w32-backend.c -o w32-backend.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/cairo -I/usr/X11R7/include/pixman-1 -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/libpng16 -D_REENTRANT -I. -Iinclude -DPNG_NO_ASSEMBLER_CODE -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -fPIC -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 -c xlib-backend.c -o xlib-backend.o gcc -shared -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -Wl,-zrelro -L/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -pthread -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -latomic -o Cairo.so cairobem.o cairogd.o cairotalk.o img-backend.o img-jpeg.o img-tiff.o pdf-backend.o ps-backend.o svg-backend.o w32-backend.o xlib-backend.o -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -L/usr/pkg/lib -L/usr/X11R7/lib -lfreetype -lbz2 -lpng16 -lz -Wl,-R/usr/pkg/lib -lcairo -lXext -lXrender -Wl,-rpath,/usr/X11R7/lib -lX11 -Wl,-R/usr/pkg/lib/R/lib -L/usr/pkg/lib/R/lib -lR ld: cannot find -latomic *** Error code 1 Stop. make: stopped in /usr/pkgsrc/graphics/R-Cairo/work/Cairo/src ERROR: compilation failed for package 'Cairo' * removing '/usr/pkgsrc/graphics/R-Cairo/work/.destdir/usr/pkg/lib/R/library/Cairo' *** Error code 1 Stop. make[1]: stopped in /usr/pkgsrc/graphics/R-Cairo *** Error code 1 Stop. make: stopped in /usr/pkgsrc/graphics/R-Cairo