=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. ===> Building for miniasm-0.3 gcc -c -g -Wall -O2 -Wc++-compat -I. sys.c -o sys.o gcc -c -g -Wall -O2 -Wc++-compat -I. sdict.c -o sdict.o gcc -c -g -Wall -O2 -Wc++-compat -I. paf.c -o paf.o gcc -c -g -Wall -O2 -Wc++-compat -I. asg.c -o asg.o gcc -c -g -Wall -O2 -Wc++-compat -I. common.c -o common.o gcc -c -g -Wall -O2 -Wc++-compat -I. hit.c -o hit.o hit.c: In function 'ma_hit_read': hit.c:103:59: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t {aka unsigned int}' [-Wformat=] if (ma_verbose >= 3) fprintf(stderr, "[M::%s::%s] read %ld hits; stored %ld hits and %d sequences (%ld bp)\n", __func__, sys_timestamp(), tot, h.n, d->n_seq, tot_len); ~~^ %d hit.c:103:76: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t {aka unsigned int}' [-Wformat=] if (ma_verbose >= 3) fprintf(stderr, "[M::%s::%s] read %ld hits; stored %ld hits and %d sequences (%ld bp)\n", __func__, sys_timestamp(), tot, h.n, d->n_seq, tot_len); ~~^ ~~~ %d hit.c:103:103: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t {aka unsigned int}' [-Wformat=] if (ma_verbose >= 3) fprintf(stderr, "[M::%s::%s] read %ld hits; stored %ld hits and %d sequences (%ld bp)\n", __func__, sys_timestamp(), tot, h.n, d->n_seq, tot_len); ~~^ %d hit.c: In function 'ma_hit_sub': hit.c:158:34: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t {aka unsigned int}' [-Wformat=] fprintf(stderr, "[M::%s::%s] %ld query sequences remain after sub\n", __func__, sys_timestamp(), n_remained); ~~^ %d hit.c: In function 'ma_hit_cut': hit.c:191:34: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t {aka unsigned int}' [-Wformat=] fprintf(stderr, "[M::%s::%s] %ld hits remain after cut\n", __func__, sys_timestamp(), m); ~~^ %d hit.c: In function 'ma_hit_flt': hit.c:214:34: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t {aka unsigned int}' [-Wformat=] fprintf(stderr, "[M::%s::%s] %ld hits remain after filtering; crude coverage after filtering: %.2f\n", __func__, sys_timestamp(), m, *cov); ~~^ %d hit.c: In function 'ma_hit_contained': hit.c:254:51: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t {aka unsigned int}' [-Wformat=] fprintf(stderr, "[M::%s::%s] %d sequences and %ld hits remain after containment removal\n", __func__, sys_timestamp(), d->n_seq, m); ~~^ %d gcc -c -g -Wall -O2 -Wc++-compat -I. asm.c -o asm.o In file included from asm.c:61:0: kdq.h:9:10: error: width of 'front' exceeds its type size_t front:58, bits:6, count, mask; \ ^ kdq.h:93:2: note: in expansion of macro '__KDQ_TYPE' __KDQ_TYPE(type) \ ^~~~~~~~~~ kdq.h:104:24: note: in expansion of macro 'KDQ_INIT2' #define KDQ_INIT(type) KDQ_INIT2(type, static inline klib_unused) ^~~~~~~~~ asm.c:62:1: note: in expansion of macro 'KDQ_INIT' KDQ_INIT(uint64_t) ^~~~~~~~ gmake: *** [Makefile:12: asm.o] Error 1 *** Error code 2 Stop. make[1]: stopped in /usr/pkgsrc/biology/miniasm *** Error code 1 Stop. make: stopped in /usr/pkgsrc/biology/miniasm