=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for R/igraph_1.4.1.tar.gz => Checksum SHA512 OK for R/igraph_1.4.1.tar.gz ===> Installing dependencies for R-igraph-1.4.1 ========================================================================== The following variables will affect the build process of this package, R-igraph-1.4.1. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp Based on these variables, the following variables have been set: * BLAS_INCLUDES (not defined) * BLAS_LIBS = -lblas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACK_LIBS = -llapack -lblas You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency bsdtar-[0-9]*: found bsdtar-3.4.3 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency R-magrittr>=1.5: found R-magrittr-2.0.3 => Full dependency R-pkgconfig>=2.0.0: found R-pkgconfig-2.0.3 => Full dependency R-rlang-[0-9]*: found R-rlang-1.0.6 => Full dependency R>=4.2.0nb1: found R-4.2.0nb5 => Full dependency libxml2>=2.9.14nb1: found libxml2-2.10.3nb2 => Full dependency gcc7>=7.5.0nb6: found gcc7-7.5.0nb6 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for R-igraph-1.4.1 ===> Extracting for R-igraph-1.4.1 ===> Patching for R-igraph-1.4.1 => Applying pkgsrc patches for R-igraph-1.4.1 => Verifying /usr/pkgsrc/math/R-igraph/patches/patch-src_vendor_plfit_hzeta.c => Applying pkgsrc patch /usr/pkgsrc/math/R-igraph/patches/patch-src_vendor_plfit_hzeta.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_vendor_plfit_hzeta.c,v 1.2 2022/05/03 00:24:20 mef Exp $ | |/* tweak the macro, not found in NetBSD as of 9.99.96 */ |/* corrected by tnn. thanks */ | |--- src/vendor/plfit/hzeta.c.orig 2022-04-20 01:23:25.000000000 +0900 |+++ src/vendor/plfit/hzeta.c 2022-04-29 00:33:15.125029161 +0900 -------------------------- Patching file src/vendor/plfit/hzeta.c using Plan A... Hunk #1 succeeded at 64. done ===> Creating toolchain wrappers for R-igraph-1.4.1 ===> Configuring for R-igraph-1.4.1 => Checking for portability problems in extracted files